Selected article for: "bind peptide and major histocompatibility"
Author: Kaliamurthi, Satyavani; Selvaraj, Gurudeeban; Kaushik, Aman Chandra; Gu, Ke-Ren; Wei, Dong-Qing
Title: Designing of CD8(+) and CD8(+)-overlapped CD4(+) epitope vaccine by targeting late and early proteins of human papillomavirus
  • Document date: 2018_10_2
    • ID: j0runrkf_37
    Snippet: CD8 + and its overlapped CD4 + epitopes of HPV Notes: a cTl prediction by netcTl 1.2 (threshold >0.75). b Prediction by netMhc ann 3.4; proteasome cleavage score is interpreted as logarithm of the total amount of cleavage site usage liberating the peptide c-terminus; TaP score estimates an effective log(ic 50 ) value for binding to TaP of a peptide or its n-terminal prolonged precursors; Mhc binding prediction score is identical to the class i -l.....
    Document: CD8 + and its overlapped CD4 + epitopes of HPV Notes: a cTl prediction by netcTl 1.2 (threshold >0.75). b Prediction by netMhc ann 3.4; proteasome cleavage score is interpreted as logarithm of the total amount of cleavage site usage liberating the peptide c-terminus; TaP score estimates an effective log(ic 50 ) value for binding to TaP of a peptide or its n-terminal prolonged precursors; Mhc binding prediction score is identical to the class i -log(ic 50 ) values; processing score combines the proteasomal cleavage and TaP transport predictions, and predicts a quantity proportional to the amount of peptide present in the endoplasmic reticulum, where a peptide can bind to multiple Mhc molecules; total score combines the proteasomal cleavage, TaP transport, and Mhc-binding predictions and predicts a quantity proportional to the amount of peptide presented by Mhc molecules on the cell surface. Abbreviations: cTl, cytotoxic T lymphocyte; hla, human leukocyte antigen; hPV, human papillomavirus; Mhc, major histocompatibility complex; TaP, transporter associated with antigen processing.

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