Selected article for: "custom database and reference database"
Author: Sofia Morfopoulou; Vincent Plagnol
Title: Bayesian mixture analysis for metagenomic community profiling.
  • Document date: 2014_7_25
    • ID: 058r9486_28
    Snippet: Protein reference database For the analysis of human clinical samples, we use a custom reference database that combineds viral, bacterial, human and mouse RefSeq proteins. All viruses are used (ftp://ftp.ncbi.nlm.nih.gov/refseq/release/ viral/viral.1.protein.faa.gz) as well as all the bacteria of the human microbiome, according to ftp: //ftp.ncbi.nih.gov/genomes/HUMAN_MICROBIOM/Bacteria/all.faa.tar.gz......
    Document: Protein reference database For the analysis of human clinical samples, we use a custom reference database that combineds viral, bacterial, human and mouse RefSeq proteins. All viruses are used (ftp://ftp.ncbi.nlm.nih.gov/refseq/release/ viral/viral.1.protein.faa.gz) as well as all the bacteria of the human microbiome, according to ftp: //ftp.ncbi.nih.gov/genomes/HUMAN_MICROBIOM/Bacteria/all.faa.tar.gz.

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