Author: Karthi Balasubramanian; Nithin Nagaraj
Title: Automatic Identification of SARS Coronavirus using Compression-Complexity Measures Document date: 2020_3_27
ID: ljli6a2z_33
Snippet: We first analyzed the genome primary sequences of the following viruses: SARS coronavirus Urbani (AY278741.1), SARS coronavirus BJ01 (AY278488.2) and Avian Infectious Bronchitis coronavirus reference sequence (NC_001451.1). The first two virsues belong to the SARS-CoV-1 strain. The genome sequences were obtained from Genbank database, the details of which were mentioned in Section 2.2. Table 1 gives the details of the genome sequences that we use.....
Document: We first analyzed the genome primary sequences of the following viruses: SARS coronavirus Urbani (AY278741.1), SARS coronavirus BJ01 (AY278488.2) and Avian Infectious Bronchitis coronavirus reference sequence (NC_001451.1). The first two virsues belong to the SARS-CoV-1 strain. The genome sequences were obtained from Genbank database, the details of which were mentioned in Section 2.2. Table 1 gives the details of the genome sequences that we use for the analysis. The first step in our analysis is the conversion of primary sequences into 0-1 sequences before we can evaluate complexity values. For this, we have considered three different methods to categorize the nucleotide bases and map them to the symbols 0 and 1 based on their:
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