Selected article for: "custom database and genome sequence"

Author: Mordecai, Gideon J; Wilfert, Lena; Martin, Stephen J; Jones, Ian M; Schroeder, Declan C
Title: Diversity in a honey bee pathogen: first report of a third master variant of the Deformed Wing Virus quasispecies
  • Document date: 2015_11_17
  • ID: k2n6ropo_15
    Snippet: To quantify the number of reads attributed to each DWV variant using BLAST (Supplementary Table S1 ), the novel Type C variant genome sequence was added to the custom DWV family database and the BLAST for each sample was carried out a second time. This allowed the Type C variants to be categorised correctly by BLAST rather than attributed to the closets hit to the three other reference genomes......
    Document: To quantify the number of reads attributed to each DWV variant using BLAST (Supplementary Table S1 ), the novel Type C variant genome sequence was added to the custom DWV family database and the BLAST for each sample was carried out a second time. This allowed the Type C variants to be categorised correctly by BLAST rather than attributed to the closets hit to the three other reference genomes.

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