Selected article for: "GEO database and multiple probe"
Author: Noh, Heeju; Shoemaker, Jason E; Gunawan, Rudiyanto
Title: Network perturbation analysis of gene transcriptional profiles reveals protein targets and mechanism of action of drugs and influenza A viral infection
  • Document date: 2018_4_6
    • ID: j80hnhpb_10
    Snippet: For influenza A infection analysis, we obtained the raw microarray data of four influenza studies (27) (28) (29) (30) from GEO database (accession numbers: GSE40844, GSE37571, GSE33142 and GSE28166). The raw data were background-corrected and normalized using normexp and quantile methods in limma package of Bioconductor. The log 2 FCs and their adjusted P-values were again calculated by limma. The probes were mapped to the corresponding gene symb.....
    Document: For influenza A infection analysis, we obtained the raw microarray data of four influenza studies (27) (28) (29) (30) from GEO database (accession numbers: GSE40844, GSE37571, GSE33142 and GSE28166). The raw data were background-corrected and normalized using normexp and quantile methods in limma package of Bioconductor. The log 2 FCs and their adjusted P-values were again calculated by limma. The probes were mapped to the corresponding gene symbols using hgug4112a.db package (Entrez Gene database as of 27 September 2015). Like before, for genes with multiple probe sets, we chose the log 2 FC value corresponding to the probe set with the smallest average adjusted P-value.

    Search related documents:
    Co phrase search for related documents
    • accession number and GEO database: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
    • accession number and limma package: 1
    • accession number and multiple probe set gene: 1
    • Bioconductor limma package and infection analysis: 1, 2
    • Bioconductor limma package and limma package: 1, 2, 3
    • FC value and limma package: 1, 2
    • gene symbol and GEO database: 1, 2
    • gene symbol and limma package: 1, 2
    • gene symbol and multiple probe set: 1
    • gene symbol and multiple probe set gene: 1, 2
    • GEO database and infection analysis: 1
    • GEO database and limma package: 1, 2, 3
    • GEO database and multiple probe set gene: 1
    • infection analysis and influenza infection analysis: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
    • infection analysis and influenza study: 1, 2, 3, 4, 5, 6
    • infection analysis and limma package: 1, 2