Author: Sofia Morfopoulou; Vincent Plagnol
Title: Bayesian mixture analysis for metagenomic community profiling. Document date: 2014_7_25
ID: 058r9486_37
Snippet: Human clinical sample -species absent from the database We then compared the performance of the three methods in a scenario where sequences present in the sample are absent from our reference database. We analyzed a second brain biopsy sample from an undiagnosed patient. 32 million RNA-Seq reads were obtained using the HiSeq instrument. Following initial processing using our bionformatics pipeline, the dataset had 1,261,575 non host reads and con.....
Document: Human clinical sample -species absent from the database We then compared the performance of the three methods in a scenario where sequences present in the sample are absent from our reference database. We analyzed a second brain biopsy sample from an undiagnosed patient. 32 million RNA-Seq reads were obtained using the HiSeq instrument. Following initial processing using our bionformatics pipeline, the dataset had 1,261,575 non host reads and contigs for subsequent analyses. There were 3,150 potential species based on the BLASTx output.
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