Selected article for: "human infect virus and influenza virus"
Author: Hayden C. Metsky; Katherine J. Siddle; Adrianne Gladden-Young; James Qu; David K. Yang; Patrick Brehio; Andrew Goldfarb; Anne Piantadosi; Shirlee Wohl; Amber Carter; Aaron E. Lin; Kayla G. Barnes; Damien C. Tully; Björn Corleis; Scott Hennigan; Giselle Barbosa-Lima; Yasmine R. Vieira; Lauren M. Paul; Amanda L. Tan; Kimberly F. Garcia; Leda A. Parham; Ikponmwonsa Odia; Philomena Eromon; Onikepe A. Folarin; Augustine Goba; Etienne Simon-Lorière; Lisa Hensley; Angel Balmaseda; Eva Harris; Douglas Kwon; Todd M. Allen; Jonathan A. Runstadler; Sandra Smole; Fernando A. Bozza; Thiago M. L. Souza; Sharon Isern; Scott F. Michael; Ivette Lorenzana; Lee Gehrke; Irene Bosch; Gregory Ebel; Donald Grant; Christian Happi; Daniel J. Park; Andreas Gnirke; Pardis C. Sabeti; Christian B. Matranga
Title: Capturing diverse microbial sequence with comprehensive and scalable probe design
  • Document date: 2018_3_12
    • ID: a9lkhayg_64
    Snippet: In particular, in the input to the design of V ALL we included all sequences in NCBI's accession list of viral genomes 80 for which human was listed as a host, along with all sequences from a selection of additional species (Supplementary Table 1 ). Since genome neighbors for Influenza A virus, Influenza B virus, and Influenza C virus were not included in the accession list, we included a separate selection of sequences for Influenza A virus that.....
    Document: In particular, in the input to the design of V ALL we included all sequences in NCBI's accession list of viral genomes 80 for which human was listed as a host, along with all sequences from a selection of additional species (Supplementary Table 1 ). Since genome neighbors for Influenza A virus, Influenza B virus, and Influenza C virus were not included in the accession list, we included a separate selection of sequences for Influenza A virus that encompass all hemagglutinin and neuraminidase subtypes that infect human (in V ALL , 8,629 sequences), as well as sequences for Influenza B (376 sequences) and C (7 sequences) viruses. Furthermore, we trimmed long terminal repeats from all sequences of HIV-1 and HIV-2 used as input to both V ALL and V WAFR . In V ZC we included, along with genome neighbors, partial sequences of Zika virus from NCBI GenBank 36 .

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