Selected article for: "construct tree and phylogenetic tree"

Author: MINAMI, Shohei; TERADA, Yutaka; SHIMODA, Hiroshi; TAKIZAWA, Masaki; ONUMA, Mamoru; OTA, Akihiko; OTA, Yuichi; AKABANE, Yoshihito; TAMUKAI, Kenichi; WATANABE, Keiichiro; NAGANUMA, Yumiko; KANAGAWA, Eiichi; NAKAMURA, Kaneichi; OHASHI, Masanari; TAKAMI, Yoshinori; MIWA, Yasutsugu; TANOUE, Tomoaki; OHWAKI, Masao; OHTA, Jouji; UNE, Yumi; MAEDA, Ken
Title: Establishment of serological test to detect antibody against ferret coronavirus
  • Document date: 2016_3_3
  • ID: 3g75spkc_10
    Snippet: ELISA: The concentration of purified recombinant proteins was adjusted to 5 µg ml −1 with adsorption buffer (0.05 M carbonate-bicarbonate buffer, pH 9.6). GST was used as a control at 5µg ml −1 . One hundred microliters of purified recombinant proteins and GST were added to 96well microplates (Maxisorp; Nunc, Roskilde, Denmark). After incubation at 37°c for 2 hr, plates were placed at 4°c overnight. The wells were washed three times with .....
    Document: ELISA: The concentration of purified recombinant proteins was adjusted to 5 µg ml −1 with adsorption buffer (0.05 M carbonate-bicarbonate buffer, pH 9.6). GST was used as a control at 5µg ml −1 . One hundred microliters of purified recombinant proteins and GST were added to 96well microplates (Maxisorp; Nunc, Roskilde, Denmark). After incubation at 37°c for 2 hr, plates were placed at 4°c overnight. The wells were washed three times with PBS containing 0.05% Tween 20 (PBS-T) and then incubated with 200 µl of 1% Block Ace (Dainippon Pharmaceutical, Osaka, Japan) in PBS at 37°c for 30 min. After washing three times with PBS-T, 100 µl of diluted sera or plasma were added to duplicate wells and incubated at 37°c for 30 min. Sera or plasma was diluted to 1:100 or 1:500 with PBS-T containing 0.4% Block Ace. Subsequently, wells were washed three times with PBS-T before 100 µl of peroxidase-conjugated anti-ferret immunoglobulin (ROcKLAND, Limerick, PA, U.S.A.) diluted with PBS-T containing 0.4% Block Ace was added and incubated at 37°c for 30 min. Following three washes with PBS-T, 100 µl of Horseradish Peroxidase Substrate (BIO-RAD) was added to each well. After incubation at room temperature for 30 min, the enzymatic reaction was stopped by adding 100 µl of 2% oxalic acid to each well. The absorbance was measured using a spectrophotometer (BIO-RAD) at 415 nm. All results were subtracted from the value for GST, and the cut-off value was arbitrarily set at 0.5. Phylogenetic analysis: A phylogenetic tree was constructed using the program MrBayes Ver. 3.2.2 [7] for MrModeltest analysis with a WAG substitution matrix [10] . We referred to the following sequences to construct the phylogenetic tree of N protein sequences; FREcV strain MSU-2 (GU338457), FREcV strain MSU-1 (DQ340562), FRScV strain MSU-1 (GU338456), mink coV strain WD1127 (HM245925), mink coV strain WD1133 (HM245926), ccoV type II strain fc1 (AB781790), FcoV type II strain M91-267 (AB781788), FcoV type I strain c3663 (AB535528), SARS-coV strain BJ182-12 (EU371564) and FRcoV strain Yamaguchi-1 (Lc029423). The tree was represented graphically using FigTree Ver. 1.4.2 [1] .

    Search related documents:
    Co phrase search for related documents
    • phylogenetic analysis and recombinant protein: 1, 2, 3, 4, 5, 6, 7, 8, 9
    • phylogenetic analysis and substitution matrix: 1, 2, 3
    • phylogenetic tree and protein sequence: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • phylogenetic tree and recombinant protein: 1
    • phylogenetic tree and substitution matrix: 1, 2
    • plasma sera and protein sequence: 1, 2, 3
    • protein sequence and recombinant protein: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53
    • protein sequence and room temperature: 1, 2, 3
    • protein sequence and substitution matrix: 1
    • recombinant protein and room temperature: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
    • recombinant protein and room temperature incubation: 1, 2
    • substitution matrix and WAG substitution matrix: 1