An emerging cyberinfrastructure for biodefense pathogen and pathogen–host data

Zhang, C.; Crasta, O.; Cammer, S.; Will, R.; Kenyon, R.; Sullivan, D.; Yu, Q.; Sun, W.; Jha, R.; Liu, D.; Xue, T.; Zhang, Y.; Moore, M.; McGarvey, P.; Huang, H.; Chen, Y.; Zhang, J.; Mazumder, R.; Wu, C.; Sobral, B.

The RC supports data export at different levels, for instance: (i) summary data at organism level can be exported in different formats (e.g. FASTA), by selecting the relevant organism in the organism field of the annotation pages (http://pir.georgetown.edu/cgi-bin/ textsearch_cat.pl). (ii) Data from individual experiments (e.g. identified protein list of Salmonella typhimurium grown under log phase) can be queried from the experiment data pages of mass spectrometry data type, with the experiment ID 'PNNL_MS_SAM_05' (http:// proteinbank.vbi.vt.edu/ProteinBank/g/findexpbyid.do?id =PNNL_MS_SAM_05) and exported as a tab delimited file. (iii) Specific individual or group gene(s)/protein(s) in which the user is interested can be searched by entering keyword(s) or UniProtKB ID(s), and the search results can be exported as well. (iv) Experimental results data provided by the PRCs can be downloaded from the FTP site.