Author: Wassenaar, Trudy M.; Jun, Se-Ran; Robeson, Michael; Ussery, David W.
Title: Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species Document date: 2019_11_19
ID: 3hayxyuk_29
Snippet: (b) A weaker preference for codons having A at the third position is visible for Lys, Gly, and Arg. The deoptimized codon usage is still evident when only those amino acids are considered that occur at a high frequency (>4.5%) in the polypeptide of HAV (Figure 2d ). That HAV strongly prefers T at the third position may be partly responsible for its high T-content (32.8% on average, Table 1 ), but this is not a general rule. For instance, rabies v.....
Document: (b) A weaker preference for codons having A at the third position is visible for Lys, Gly, and Arg. The deoptimized codon usage is still evident when only those amino acids are considered that occur at a high frequency (>4.5%) in the polypeptide of HAV (Figure 2d ). That HAV strongly prefers T at the third position may be partly responsible for its high T-content (32.8% on average, Table 1 ), but this is not a general rule. For instance, rabies virus (a negative strand ssRNA virus) prefers codons ending in G while its genome contains only 22.7% G (Zhang et al., 2018) .
Search related documents:
Co phrase search for related documents- amino acid and general rule: 1
- amino acid and high frequency: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- amino acid and negative strand: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21
- codon usage and high frequency: 1, 2, 3, 4
- codon usage and negative strand: 1, 2
- great high frequency and high frequency: 1
- high frequency and negative strand: 1, 2
Co phrase search for related documents, hyperlinks ordered by date