Author: Wassenaar, Trudy M.; Jun, Se-Ran; Robeson, Michael; Ussery, David W.
Title: Comparative genomics of hepatitis A virus, hepatitis C virus, and hepatitis E virus provides insights into the evolutionary history of Hepatovirus species Document date: 2019_11_19
ID: 3hayxyuk_48
Snippet: These were not included in panel 4A for clarity, but their similarity in base composition can be seen in Table 1 . In terms of %GC versus %AT, rhinovirus and cosavirus were closer to HAV than they were to HCV/ HEV (panel 4C) although in terms of their codon usage preference, they clearly did not belong to the HAV group. This shows that the codon usage findings only partly correlate with nucleotide composition. is clearly visible, as is the avoida.....
Document: These were not included in panel 4A for clarity, but their similarity in base composition can be seen in Table 1 . In terms of %GC versus %AT, rhinovirus and cosavirus were closer to HAV than they were to HCV/ HEV (panel 4C) although in terms of their codon usage preference, they clearly did not belong to the HAV group. This shows that the codon usage findings only partly correlate with nucleotide composition. is clearly visible, as is the avoidance of C at that same position. That HAV also has a notable preference for C at the second position had not been apparent from the wheel plot of Figure 2 . In none of these analyses did HAV behave differently from some or all of the other analyzed genomes.
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