Author: Sabath, Niv; Wagner, Andreas; Karlin, David
Title: Evolution of Viral Proteins Originated De Novo by Overprinting Document date: 2012_7_19
ID: 629fwmgk_11
Snippet: The third and final property is the Codon Similarity Index (CSI), which measures the similarity between the codon usage of a gene and that of the rest of the genome containing it. CSI is based on the same calculations as the Codon Adaptation Index (CAI), a commonly used measure of codon usage bias (Sharp and Li 1987) but uses the rest of the genome as a reference set instead of a data set of highly expressed genes (see Materials and Methods)......
Document: The third and final property is the Codon Similarity Index (CSI), which measures the similarity between the codon usage of a gene and that of the rest of the genome containing it. CSI is based on the same calculations as the Codon Adaptation Index (CAI), a commonly used measure of codon usage bias (Sharp and Li 1987) but uses the rest of the genome as a reference set instead of a data set of highly expressed genes (see Materials and Methods).
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